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1.
Proc Natl Acad Sci U S A ; 119(35): e2204400119, 2022 08 30.
Artículo en Inglés | MEDLINE | ID: mdl-35994662

RESUMEN

Ecological niche differences are necessary for stable species coexistence but are often difficult to discern. Models of dietary niche differentiation in large mammalian herbivores invoke the quality, quantity, and spatiotemporal distribution of plant tissues and growth forms but are agnostic toward food plant species identity. Empirical support for these models is variable, suggesting that additional mechanisms of resource partitioning may be important in sustaining large-herbivore diversity in African savannas. We used DNA metabarcoding to conduct a taxonomically explicit analysis of large-herbivore diets across southeastern Africa, analyzing ∼4,000 fecal samples of 30 species from 10 sites in seven countries over 6 y. We detected 893 food plant taxa from 124 families, but just two families-grasses and legumes-accounted for the majority of herbivore diets. Nonetheless, herbivore species almost invariably partitioned food plant taxa; diet composition differed significantly in 97% of pairwise comparisons between sympatric species, and dissimilarity was pronounced even between the strictest grazers (grass eaters), strictest browsers (nongrass eaters), and closest relatives at each site. Niche differentiation was weakest in an ecosystem recovering from catastrophic defaunation, indicating that food plant partitioning is driven by species interactions, and was stronger at low rainfall, as expected if interspecific competition is a predominant driver. Diets differed more between browsers than grazers, which predictably shaped community organization: Grazer-dominated trophic networks had higher nestedness and lower modularity. That dietary differentiation is structured along taxonomic lines complements prior work on how herbivores partition plant parts and patches and suggests that common mechanisms govern herbivore coexistence and community assembly in savannas.


Asunto(s)
Dieta , Pradera , Herbivoria , Mamíferos , Plantas , África , Animales , Conducta Competitiva , Código de Barras del ADN Taxonómico , Dieta/estadística & datos numéricos , Dieta/veterinaria , Fabaceae/clasificación , Fabaceae/genética , Heces , Mamíferos/clasificación , Mamíferos/fisiología , Plantas/clasificación , Plantas/genética , Poaceae/clasificación , Poaceae/genética , Lluvia
2.
J Sci Food Agric ; 102(2): 750-756, 2022 Jan 30.
Artículo en Inglés | MEDLINE | ID: mdl-34192366

RESUMEN

BACKGROUND: Due to increasing demand for livestock products in sub-Saharan Africa, increasing livestock productivity is a priority. The core constraint is limited availability of feed of good quality. We assessed optimal harvesting time of three improved grasses, two Urochloa lines (Basilisk a selection from wild population, Cayman - a hybrid, a product of breeding) plus Mombasa, a Megathyrsus selection. All are released in Latin America and Kenya or in the registration in other regional countries. We assessed dry matter (DM) yields and quality at 4, 6, 8 and 12 weeks of age in two sites. RESULTS: DM yields (in t ha-1 ) were of the order Cayman (9.6-14.3) > Mombasa (8.0-11.3) > Basilisk (5.5-10.2) in one site, and Cayman (6.4-9.7) > Basilisk (4.9-7.6) > Mombasa (3.3-5.9) at site two. The harvesting regimes produced DM largely similar for weeks 4 and 6, 6 and 8, 8 and 12. Across the sites quality was of the order Cayman > Mombasa > Basilisk for neutral detergent fiber (NDF), metabolizable energy (ME) and crude protein (CP). With increasing harvesting interval, MJ ME ha-1 and kg CP ha-1 were inconsistent across both sites, but significant differences returned for MJ ME ha-1 unlike kg CP ha-1 . CONCLUSIONS: Harvesting at either 8 or 12 weeks is not recommendable as quality drops without an increase in DM yield that can compensate despite doubling and tripling time respectively, compared to 4 weeks. We recommend harvesting at 4 through 6 weeks for any of the three grasses based on yield against time, and demand at the intensified cut-and-carry smallholder systems. © 2021 The Authors. Journal of The Science of Food and Agriculture published by John Wiley & Sons Ltd on behalf of Society of Chemical Industry.


Asunto(s)
Poaceae/química , Poaceae/crecimiento & desarrollo , Alimentación Animal/análisis , Fibras de la Dieta/análisis , Kenia , Valor Nutritivo , Poaceae/clasificación , Control de Calidad , Estaciones del Año , Factores de Tiempo
3.
BMC Plant Biol ; 21(1): 505, 2021 Nov 01.
Artículo en Inglés | MEDLINE | ID: mdl-34724894

RESUMEN

BACKGROUND: The proper identification of feather grasses in nature is often limited due to phenotypic variability and high morphological similarity between many species. Among plausible factors influencing this issue are hybridisation and introgression recently detected in the genus. Nonetheless, to date, only a bounded set of taxa have been investigated using integrative taxonomy combining morphological and molecular data. Here, we report the first large-scale study on five feather grass species across several hybrid zones in Russia and Central Asia. In total, 302 specimens were sampled in the field and classified based on the current descriptions of these taxa. They were then genotyped with high density genome-wide markers and measured based on a set of morphological characters to delimitate species and assess levels of hybridisation and introgression. Moreover, we tested species for past introgression and estimated divergence times between them. RESULTS: Our findings demonstrated that 250 specimens represent five distinct species: S. baicalensis, S. capillata, S. glareosa, S. grandis and S. krylovii. The remaining 52 individuals provided evidence for extensive hybridisation between S. capillata and S. baicalensis, S. capillata and S. krylovii, S. baicalensis and S. krylovii, as well as to a lesser extent between S. grandis and S. krylovii, S. grandis and S. baicalensis. We detected past reticulation events between S. baicalensis, S. krylovii, S. grandis and inferred that diversification within species S. capillata, S. baicalensis, S. krylovii and S. grandis started ca. 130-96 kya. In addition, the assessment of genetic population structure revealed signs of contemporary gene flow between populations across species from the section Leiostipa, despite significant geographical distances between some of them. Lastly, we concluded that only 5 out of 52 hybrid taxa were properly identified solely based on morphology. CONCLUSIONS: Our results support the hypothesis that hybridisation is an important mechanism driving evolution in Stipa. As an outcome, this phenomenon complicates identification of hybrid taxa in the field using morphological characters alone. Thus, integrative taxonomy seems to be the only reliable way to properly resolve the phylogenetic issue of Stipa. Moreover, we believe that feather grasses may be a suitable genus to study hybridisation and introgression events in nature.


Asunto(s)
Evolución Biológica , Flujo Génico , Introgresión Genética , Hibridación Genética , Poaceae/clasificación , Poaceae/genética , Asia Central , Regulación de la Expresión Génica de las Plantas , Genes de Plantas , Variación Genética , Estudio de Asociación del Genoma Completo , Genotipo , Geografía , Filogenia , Federación de Rusia , Especificidad de la Especie
4.
Nat Commun ; 12(1): 5466, 2021 09 15.
Artículo en Inglés | MEDLINE | ID: mdl-34526499

RESUMEN

Moso bamboo (Phyllostachys edulis) is an economically and ecologically important nontimber forestry species. Further development of this species as a sustainable bamboo resource has been hindered by a lack of population genome information. Here, we report a moso bamboo genomic variation atlas of 5.45 million single-nucleotide polymorphisms (SNPs) from whole-genome resequencing of 427 individuals covering 15 representative geographic areas. We uncover low genetic diversity, high genotype heterozygosity, and genes under balancing selection underlying moso bamboo population adaptation. We infer its demographic history with one bottleneck and its recently small population without a rebound. We define five phylogenetic groups and infer that one group probably originated by a single-origin event from East China. Finally, we conduct genome-wide association analysis of nine important property-related traits to identify candidate genes, many of which are involved in cell wall, carbohydrate metabolism, and environmental adaptation. These results provide a foundation and resources for understanding moso bamboo evolution and the genetic mechanisms of agriculturally important traits.


Asunto(s)
Genoma de Planta/genética , Estudio de Asociación del Genoma Completo/métodos , Poaceae/genética , Transcriptoma , Adaptación Fisiológica/genética , China , Evolución Molecular , Regulación de la Expresión Génica de las Plantas , Variación Genética , Genética de Población/métodos , Genómica/métodos , Geografía , Filogenia , Proteínas de Plantas/genética , Poaceae/clasificación , Poaceae/metabolismo , Polimorfismo de Nucleótido Simple , Secuenciación del Exoma/métodos
5.
Genes (Basel) ; 12(8)2021 08 13.
Artículo en Inglés | MEDLINE | ID: mdl-34440416

RESUMEN

Prairie cordgrass (Spartina pectinata Link) is a native perennial warm-season (C4) grass common in North American prairies. With its high biomass yield and abiotic stress tolerance, there is a high potential of developing prairie cordgrass for conservation practices and as a dedicated bioenergy crop for sustainable cellulosic biofuel production. However, as with many other undomesticated grass species, little information is known about the genetic diversity or population structure of prairie cordgrass natural populations as compared to their ecotypic and geographic adaptation in North America. In this study, we sampled and characterized a total of 96 prairie cordgrass natural populations with 9315 high quality SNPs from a genotyping-by-sequencing (GBS) approach. The natural populations were collected from putative remnant prairie sites throughout the Midwest and Eastern USA, which are the major habitats for prairie cordgrass. Partitioning of genetic variance using SNP marker data revealed significant variance among and within populations. Two potential gene pools were identified as being associated with ploidy levels, geographical separation, and climatic separation. Geographical factors such as longitude and altitude, and environmental factors such as annual temperature, annual precipitation, temperature of the warmest month, precipitation of the wettest month, precipitation of Spring, and precipitation of the wettest month are important in affecting the intraspecific distribution of prairie cordgrass. The divergence of prairie cordgrass natural populations also provides opportunities to increase breeding value of prairie cordgrass as a bioenergy and conservation crop.


Asunto(s)
Ecosistema , Variación Genética , Genoma de Planta , Poaceae/genética , Filogeografía , Poaceae/clasificación , Estados Unidos
6.
Sci Rep ; 11(1): 15345, 2021 07 28.
Artículo en Inglés | MEDLINE | ID: mdl-34321531

RESUMEN

The Eurasian plant Stipa capillata is the most widespread species within feather grasses. Many taxa of the genus are dominants in steppe plant communities and can be used for their classification and in studies related to climate change. Moreover, some species are of economic importance mainly as fodder plants and can be used for soil remediation processes. Although large-scale molecular data has begun to appear, there is still no complete or draft genome for any Stipa species. Thus, here we present a single-molecule long-read sequencing dataset generated using the Pacific Biosciences Sequel System. A draft genome of about 1004 Mb was obtained with a contig N50 length of 351 kb. Importantly, here we report 81,224 annotated protein-coding genes, present 77,614 perfect and 58 unique imperfect SSRs, reveal the putative allopolyploid nature of S. capillata, investigate the evolutionary history of the genus, demonstrate structural heteroplasmy of the chloroplast genome and announce for the first time the mitochondrial genome in Stipa. The assembled nuclear, mitochondrial and chloroplast genomes provide a significant source of genetic data for further works on phylogeny, hybridisation and population studies within Stipa and the grass family Poaceae.


Asunto(s)
Genoma del Cloroplasto , Genoma Mitocondrial , Genoma de Planta , Proteínas de Plantas/genética , Poaceae/genética , Mapeo Contig , Europa (Continente) , Tamaño del Genoma , Heteroplasmia , Repeticiones de Microsatélite , Filogenia , Fitomejoramiento/métodos , Proteínas de Plantas/clasificación , Ploidias , Poaceae/clasificación
7.
Appl Environ Microbiol ; 87(17): e0089521, 2021 08 11.
Artículo en Inglés | MEDLINE | ID: mdl-34161142

RESUMEN

Grasslands represent a critical ecosystem important for global food production, soil carbon storage, and water regulation. Current intensification and expansion practices add to the degradation of grasslands and dramatically increase greenhouse gas emissions and pollution. Thus, new ways to sustain and improve their productivity are needed. Research efforts focus on the plant-leaf microbiome, or phyllosphere, because its microbial members impact ecosystem function by influencing pathogen resistance, plant hormone production, and nutrient availability through processes including nitrogen fixation. However, little is known about grassland phyllospheres and their response to environmental stress. In this study, globally dominant temperate and tropical forage grass species were grown in a greenhouse under current climate conditions and drought conditions that mimic future climate predictions to understand if (i) plant host taxa influence microbial community assembly, (ii) microbial communities respond to drought stress, and (iii) phyllosphere community changes correlate to changes in plant host traits and stress-response strategies. Community analysis using high-resolution sequencing revealed Gammaproteobacteria as the dominant bacterial class, which increased under severe drought stress on both temperate and tropical grasses while overall bacterial community diversity declined. Bacterial community diversity, structure, and response to drought were significantly different between grass species. This community dependence on plant host species correlated with differences in grass species traits, which became more defined under drought stress conditions, suggesting symbiotic evolutionary relationships between plant hosts and their associated microbial community. Further understanding these strategies and the functions microbes provide to plants will help us utilize microbes to promote agricultural and ecosystem productivity in the future. IMPORTANCE Globally important grassland ecosystems are at risk of degradation due to poor management practices compounded by predicted increases in severity and duration of drought over the next century. Finding new ways to support grassland productivity is critical to maintaining their ecological and agricultural benefits. Discerning how grassland microbial communities change in response to climate stress will help us understand how plant-microbe relationships may be useful to sustainably support grasslands in the future. In this study, phyllosphere community diversity and composition were significantly altered under drought conditions. The significance of our research is demonstrating how severe climate stress reduces bacterial community diversity, which previously was directly associated with decreased plant productivity. These findings guide future questions about functional plant-microbe interactions under stress conditions, greatly enhancing our understanding of how bacteria can increase food security by promoting grassland growth and resilience.


Asunto(s)
Bacterias/aislamiento & purificación , Microbiota , Poaceae/microbiología , Agua/metabolismo , Bacterias/clasificación , Bacterias/genética , Bacterias/metabolismo , Sequías , Ecosistema , Pradera , Poaceae/clasificación , Poaceae/crecimiento & desarrollo , Poaceae/metabolismo , Suelo/química , Microbiología del Suelo , Agua/análisis
8.
Nat Commun ; 12(1): 2458, 2021 04 28.
Artículo en Inglés | MEDLINE | ID: mdl-33911077

RESUMEN

Miscanthus, a rhizomatous perennial plant, has great potential for bioenergy production for its high biomass and stress tolerance. We report a chromosome-scale assembly of Miscanthus lutarioriparius genome by combining Oxford Nanopore sequencing and Hi-C technologies. The 2.07-Gb assembly covers 96.64% of the genome, with contig N50 of 1.71 Mb. The centromere and telomere sequences are assembled for all 19 chromosomes and chromosome 10, respectively. Allotetraploid origin of the M. lutarioriparius is confirmed using centromeric satellite repeats. The tetraploid genome structure and several chromosomal rearrangements relative to sorghum are clearly demonstrated. Tandem duplicate genes of M. lutarioriparius are functional enriched not only in terms related to stress response, but cell wall biosynthesis. Gene families related to disease resistance, cell wall biosynthesis and metal ion transport are greatly expanded and evolved. The expansion of these families may be an important genomic basis for the enhancement of remarkable traits of M. lutarioriparius.


Asunto(s)
Cromosomas de las Plantas/genética , Genoma de Planta/genética , Poaceae/genética , Composición de Base/genética , Biomasa , Pared Celular/metabolismo , Centrómero/genética , Cloroplastos/genética , Biología Computacional , Variación Genética/genética , Secuenciación de Nucleótidos de Alto Rendimiento , Transporte Iónico/genética , Fotosíntesis/genética , Filogenia , Poaceae/clasificación , Análisis de Secuencia de ADN , Homología de Secuencia , Sorghum/genética , Telómero/genética
9.
Mol Phylogenet Evol ; 159: 107110, 2021 06.
Artículo en Inglés | MEDLINE | ID: mdl-33609709

RESUMEN

In this study, we analyzed 313 plastid genomes (plastomes) of Poaceae with a focus on expanding our current knowledge of relationships among the subfamily Pooideae, which represented over half the dataset (164 representatives). In total, 47 plastomes were sequenced and assembled for this study. This is the largest study of its kind to include plastome-level data, to not only increase sampling at both the taxonomic and molecular levels with the aim of resolving complex and reticulate relationships, but also to analyze the effects of alignment gaps in large-scale analyses, as well as explore divergences in the subfamily with an expanded set of 14 accepted grass fossils for more accurate calibrations and dating. Incorporating broad systematic assessments of Pooideae taxa conducted by authors within the last five years, we produced a robust phylogenomic reconstruction for the subfamily, which included all but two supergeneric taxa (Calothecinae and Duthieeae). We further explored how including alignment gaps in plastome analyses oftentimes can produce incorrect or misinterpretations of complex or reticulate relationships among taxa of Pooideae. This presented itself as consistently changing relationships at specific nodes for different stripping thresholds (percentage-based removal of gaps per alignment column). Our summary recommendation for large-scale genomic plastome datasets is to strip alignment columns of all gaps to increase pairwise identity and reduce errant signal from poly A/T bias. To do this we used the "mask alignment" tool in Geneious software. Finally, we determined an overall divergence age for Pooideae of roughly 84.8 Mya, which is in line with, but slightly older than most recent estimates.


Asunto(s)
Genoma de Planta , Genoma de Plastidios , Filogenia , Poaceae/clasificación , Teorema de Bayes , Evolución Biológica , Genómica
10.
Molecules ; 26(4)2021 Feb 10.
Artículo en Inglés | MEDLINE | ID: mdl-33578916

RESUMEN

Different extracts of the Bamboo shoot skin Phyllostachys heterocycla var. pubescens were screened against panel of cancer cell lines and normal one. The cell viability results exhibited that the ethyl acetate extract showed the least vitality percentage of 2.14% of HepG2 cells. Accordingly, it was subjected to chromatographic separation, which resulted in the isolation of a new natural product; 7-hydroxy, 5-methoxy, methyl cinnamate (1), together with four known compounds. The structures of the pure isolated compounds were deduced based on different spectroscopic data. The new compound (1) was screened against the HepG2 and MCF-7 cells and showed IC50 values of 7.43 and 10.65 µM, respectively. It induced apoptotic cell death in HepG2 with total apoptotic cell death of 58.6% (12.44-fold) compared to 4.71% in control by arresting cell cycle progression at the G1 phase. Finally, compound 1 was validated as EGFR tyrosine kinase inhibitor in both enzymatic levels (IC50 = 98.65 nM compared to Erlotinib (IC50 = 78.65 nM). Finally, in silico studies of compound 1 through the molecular docking indicated its high binding affinity towards EGFR protein and the ADME pharmacokinetics indicated it as a drug-like.


Asunto(s)
Antineoplásicos/farmacología , Neoplasias/tratamiento farmacológico , Extractos Vegetales/farmacología , Poaceae/química , Inhibidores de Proteínas Quinasas/farmacología , Apoptosis , Proliferación Celular , Ensayos de Selección de Medicamentos Antitumorales , Receptores ErbB/antagonistas & inhibidores , Células Hep G2 , Humanos , Células MCF-7 , Simulación del Acoplamiento Molecular , Neoplasias/patología , Extractos Vegetales/análisis , Poaceae/clasificación , Relación Estructura-Actividad
11.
BMC Plant Biol ; 21(1): 76, 2021 Feb 05.
Artículo en Inglés | MEDLINE | ID: mdl-33546593

RESUMEN

BACKGROUND: The subfamily Bambusoideae belongs to the grass family Poaceae and has significant roles in culture, economy, and ecology. However, the phylogenetic relationships based on large-scale chloroplast genomes (CpGenomes) were elusive. Moreover, most of the chloroplast DNA sequencing methods cannot meet the requirements of large-scale CpGenome sequencing, which greatly limits and impedes the in-depth research of plant genetics and evolution. RESULTS: To develop a set of bamboo probes, we used 99 high-quality CpGenomes with 6 bamboo CpGenomes as representative species for the probe design, and assembled 15 M unique sequences as the final pan-chloroplast genome. A total of 180,519 probes for chloroplast DNA fragments were designed and synthesized by a novel hybridization-based targeted enrichment approach. Another 468 CpGenomes were selected as test data to verify the quality of the newly synthesized probes and the efficiency of the probes for chloroplast capture. We then successfully applied the probes to synthesize, enrich, and assemble 358 non-redundant CpGenomes of woody bamboo in China. Evaluation analysis showed the probes may be applicable to chloroplasts in Magnoliales, Pinales, Poales et al. Moreover, we reconstructed a phylogenetic tree of 412 bamboos (358 in-house and 54 published), supporting a non-monophyletic lineage of the genus Phyllostachys. Additionally, we shared our data by uploading a dataset of bamboo CpGenome into CNGB ( https://db.cngb.org/search/project/CNP0000502/ ) to enrich resources and promote the development of bamboo phylogenetics. CONCLUSIONS: The development of the CpGenome enrichment pipeline and its performance on bamboos recommended an inexpensive, high-throughput, time-saving and efficient CpGenome sequencing strategy, which can be applied to facilitate the phylogenetics analysis of most green plants.


Asunto(s)
Cloroplastos/metabolismo , Sondas de ADN/metabolismo , Filogenia , Poaceae/clasificación , Bases de Datos Genéticas , Genoma de Planta , Poaceae/genética , Especificidad de la Especie
12.
Commun Biol ; 3(1): 698, 2020 11 20.
Artículo en Inglés | MEDLINE | ID: mdl-33219348

RESUMEN

Fairy circles are striking regularly sized and spaced, bare circles surrounded by Stipagrostis grasses that occur over thousands of square kilometres in Namibia. The mechanisms explaining their origin, shape, persistence and regularity remain controversial. One hypothesis for the formation of vegetation rings is based on the centrifugal expansion of a single individual grass plant, via clonal growth and die-back in the centre. Clonality could explain FC origin, shape and long-term persistence as well as their regularity, if one clone competes with adjacent clones. Here, we show that for virtually all tested fairy circles the periphery is not exclusively made up of genetically identical grasses, but these peripheral grasses belong to more than one unrelated genet. These results do not support a clonal explanation for fairy circles. Lack of clonality implies that a biological reason for their origin, shape and regularity must emerge from competition between near neighbor individuals within each fairy circle. Such lack of clonality also suggests a mismatch between longevity of fairy circles versus their constituent plants. Furthermore, our findings of lack of clonality have implications for some models of spatial patterning of fairy circles that are based on self-organization.


Asunto(s)
Poaceae/clasificación , Poaceae/fisiología , Ecosistema , Namibia
13.
Nat Commun ; 11(1): 5442, 2020 10 28.
Artículo en Inglés | MEDLINE | ID: mdl-33116128

RESUMEN

Miscanthus is a perennial wild grass that is of global importance for paper production, roofing, horticultural plantings, and an emerging highly productive temperate biomass crop. We report a chromosome-scale assembly of the paleotetraploid M. sinensis genome, providing a resource for Miscanthus that links its chromosomes to the related diploid Sorghum and complex polyploid sugarcanes. The asymmetric distribution of transposons across the two homoeologous subgenomes proves Miscanthus paleo-allotetraploidy and identifies several balanced reciprocal homoeologous exchanges. Analysis of M. sinensis and M. sacchariflorus populations demonstrates extensive interspecific admixture and hybridization, and documents the origin of the highly productive triploid bioenergy crop M. × giganteus. Transcriptional profiling of leaves, stem, and rhizomes over growing seasons provides insight into rhizome development and nutrient recycling, processes critical for sustainable biomass accumulation in a perennial temperate grass. The Miscanthus genome expands the power of comparative genomics to understand traits of importance to Andropogoneae grasses.


Asunto(s)
Poaceae/genética , Biomasa , Cromosomas de las Plantas/genética , Elementos Transponibles de ADN , Diploidia , Evolución Molecular , Regulación de la Expresión Génica de las Plantas , Variación Genética , Genoma de Planta , Genómica , Modelos Genéticos , Filogenia , Poaceae/clasificación , Poaceae/crecimiento & desarrollo , Poliploidía , Saccharum/genética , Estaciones del Año , Sorghum/genética
14.
J Genet ; 992020.
Artículo en Inglés | MEDLINE | ID: mdl-32893839

RESUMEN

Ochlandra Thwaites, an economically exploited bamboo genus of the Western Ghats of India is severely affected by unsustainable extraction, natural habitat destruction and endangerment of species resources. This taxonomically challenging genus consists of a genetic mixture of 10 related polyploid species that are difficult to define and classify using traditional morphology. The present study investigated the probability of DNA barcoding using seven standard barcode regions recommended by CBOL as a supplementary tool to define true species boundaries. Distance (MEGA v.6.0) and sequence similarity (TaxonDNA) based approaches highlighted the discriminatory power of psbA-trnH intergenic spacer barcode region, but did not support true species entities. Neighbour-joining and Bayesian inference trees supported the existence of morphospecies complex in seven species of the genus owing to weak reproductive barriers amongnaturally coexisting species. Morphological affinities existing within genus might have stemmed from natural interspecific hybridization events and consequent reticulate evolution in morphospecies complex of genus Ochlandra.


Asunto(s)
Código de Barras del ADN Taxonómico/métodos , ADN Intergénico/genética , ADN de Plantas/genética , ADN Espaciador Ribosómico/genética , Poaceae/clasificación , Poaceae/genética , Análisis de Secuencia de ADN/métodos , ADN de Plantas/análisis , India , Especificidad de la Especie
15.
Sci Rep ; 10(1): 13803, 2020 08 14.
Artículo en Inglés | MEDLINE | ID: mdl-32796878

RESUMEN

Hybridisation in the wild between closely related species is a common mechanism of speciation in the plant kingdom and, in particular, in the grass family. Here we explore the potential for natural hybridisation in Stipa (one of the largest genera in Poaceae) between genetically distant species at their distribution edges in Mountains of Central Asia using integrative taxonomy. Our research highlights the applicability of classical morphological and genome reduction approaches in studies on wild plant species. The obtained results revealed a new nothospecies, Stipa × lazkovii, which exhibits intermediate characters to S. krylovii and S. bungeana. A high-density DArTseq assay disclosed that S. × lazkovii is an F1 hybrid, and established that the plastid and mitochondrial DNA was inherited from S. bungeana. In addition, molecular markers detected a hybridisation event between morphologically and genetically distant species S. bungeana and probably S. glareosa. Moreover, our findings demonstrated an uncertainty on the taxonomic status of S. bungeana that currently belongs to the section Leiostipa, but it is genetically closer to S. breviflora from the section Barbatae. Finally, we noticed a discrepancy between the current molecular data with the previous findings on S. capillata and S. sareptana.


Asunto(s)
Genoma de Planta/genética , Estudio de Asociación del Genoma Completo , Hibridación Genética/genética , Poaceae/genética , Asia Central , ADN Mitocondrial/genética , ADN de Plantas , Poaceae/clasificación , Especificidad de la Especie
16.
Genes (Basel) ; 11(8)2020 08 12.
Artículo en Inglés | MEDLINE | ID: mdl-32806602

RESUMEN

Plant-specific NAC (NAM, ATAF, CUC) transcription factor (TF) family plays important roles in biological processes such as plant growth and response to stress. Nevertheless, no information is known about NAC TFs in Cleistogenes songorica, a prominent xerophyte desert grass in northwestern China. In this study, 162 NAC genes were found from the Cleistogenes songorica genome, among which 156 C. songoricaNAC (CsNAC) genes (96.3%) were mapped onto 20 chromosomes. The phylogenetic tree constructed by CsNAC and rice NAC TFs can be separated into 14 subfamilies. Syntenic and Ka/Ks analyses showed that CsNACs were primarily expanded by genomewide replication events, and purifying selection was the primary force driving the evolution of CsNAC family genes. The CsNAC gene expression profiles showed that 36 CsNAC genes showed differential expression between cleistogamous (CL) and chasmogamous (CH) flowers. One hundred and two CsNAC genes showed differential expression under heat, cold, drought, salt and ABA treatment. Twenty-three CsNAC genes were commonly differentially expressed both under stress responses and during dimorphic floret development. Gene Ontology (GO) annotation, coexpression network and qRT-PCR tests revealed that these CsNAC genes may simultaneously regulate dimorphic floret development and the response to stress. Our results may help to characterize the NAC transcription factors in C. songorica and provide new insights into the functional research and application of the NAC family in crop improvement, especially in dimorphic floret plants.


Asunto(s)
Flores/genética , Regulación de la Expresión Génica de las Plantas , Genoma de Planta , Genómica , Desarrollo de la Planta/genética , Proteínas de Plantas/genética , Poaceae/genética , Estrés Fisiológico/genética , Secuencias de Aminoácidos , Mapeo Cromosómico , Biología Computacional , Secuencia Conservada , Evolución Molecular , Genómica/métodos , Familia de Multigenes , Filogenia , Poaceae/clasificación , Factores de Transcripción/genética , Factores de Transcripción/metabolismo , Transcriptoma
17.
Sci Rep ; 10(1): 10691, 2020 07 01.
Artículo en Inglés | MEDLINE | ID: mdl-32612150

RESUMEN

Plants exude a diverse cocktail of metabolites into the soil as response to exogenous and endogenous factors. So far, root exudates have mainly been studied under artificial conditions due to methodological difficulties. In this study, each five perennial grass and forb species were investigated for polar and semi-polar metabolites in exudates under field conditions. Metabolite collection and untargeted profiling approaches combined with a novel classification method allowed the designation of 182 metabolites. The composition of exuded polar metabolites depended mainly on the local environment, especially soil conditions, whereas the pattern of semi-polar metabolites was primarily affected by the species identity. The profiles of both polar and semi-polar metabolites differed between growth forms, with grass species being generally more similar to each other and more responsive to the abiotic environment than forb species. This study demonstrated the feasibility of investigating exudates under field conditions and to identify the driving factors of exudate composition.


Asunto(s)
Exudados de Plantas/metabolismo , Raíces de Plantas/metabolismo , Poaceae/metabolismo , Asteraceae/clasificación , Asteraceae/metabolismo , Ecosistema , Cromatografía de Gases y Espectrometría de Masas , Pradera , Fenómenos Fisiológicos de las Plantas , Plantaginaceae/clasificación , Plantaginaceae/metabolismo , Poaceae/clasificación , Ranunculaceae/clasificación , Ranunculaceae/metabolismo , Rizosfera , Rubiaceae/clasificación , Rubiaceae/metabolismo
18.
Proc Natl Acad Sci U S A ; 117(31): 18550-18556, 2020 08 04.
Artículo en Inglés | MEDLINE | ID: mdl-32675246

RESUMEN

Earth's ancient grasslands and savannas-hereafter old-growth grasslands-have long been viewed by scientists and environmental policymakers as early successional plant communities of low conservation value. Challenging this view, emerging research suggests that old-growth grasslands support substantial biodiversity and are slow to recover if destroyed by human land uses (e.g., tillage agriculture, plantation forestry). But despite growing interest in grassland conservation, there has been no global test of whether old-growth grasslands support greater plant species diversity than secondary grasslands (i.e., herbaceous communities that assemble after destruction of old-growth grasslands). Our synthesis of 31 studies, including 92 timepoints on six continents, found that secondary grasslands supported 37% fewer plant species than old-growth grasslands (log response ratio = -0.46) and that secondary grasslands typically require at least a century, and more often millennia (projected mean 1,400 y), to recover their former richness. Young (<29 y) secondary grasslands were composed of weedy species, and even as their richness increased over decades to centuries, secondary grasslands were still missing characteristic old-growth grassland species (e.g., long-lived perennials). In light of these results, the view that all grasslands are weedy communities, trapped by fire and large herbivores in a state of arrested succession, is untenable. Moving forward, we suggest that ecologists should explicitly consider grassland assembly time and endogenous disturbance regimes in studies of plant community structure and function. We encourage environmental policymakers to prioritize old-growth grassland conservation and work to elevate the status of old-growth grasslands, alongside old-growth forests, in the public consciousness.


Asunto(s)
Biodiversidad , Poaceae/clasificación , Agricultura , Ecosistema , Pradera , Poaceae/crecimiento & desarrollo
19.
PLoS One ; 15(7): e0235886, 2020.
Artículo en Inglés | MEDLINE | ID: mdl-32658902

RESUMEN

The people of Tengger, Indonesia have used plants as traditional medicine for a long time. However, this local knowledge has not been well documented until recently. Our study aims to understand the utilization of plants in traditional medicine by the people of Tengger, who inhabit the Ngadisari village, Sukapura District, Probolinggo Regency, Indonesia. We conducted semi-structured and structured interviews with a total of 52 informants that represented 10% of the total family units in the village. The parameters observed in this study include species use value (SUV), family use value (FUV), plant part use (PPU), and the relative frequency of citation that was calculated based on fidelity level (FL). We successfully identified 30 species belonging to 28 genera and 20 families that have been used as a traditional medicine to treat 20 diseases. We clustered all the diseases into seven distinct categories. Among the recorded plant families, Poaceae and Zingiberaceae were the most abundant. Plant species within those families were used to treat internal medical diseases, respiratory-nose, ear, oral/dental, and throat problems. The plant species with the highest SUV was Foeniculum vulgare Mill. (1.01), whereas the Aloaceae family (0.86) had the highest FUV. Acorus calamus L. (80%) had the highest FL percentage. The leaves were identified as the most used plant part and decoction was the dominant mode of a medicinal preparation. Out of the plants and their uses documented in our study, 26.7% of the medicinal plants and 71.8% of the uses were novel. In conclusion, the diversity of medicinal plant uses in the Ngadisari village could contribute to the development of new plant-based drugs and improve the collective revenue of the local society.


Asunto(s)
Medicina Tradicional de Asia Oriental/métodos , Plantas Medicinales/clasificación , Etnobotánica , Pueblos Indígenas , Indonesia , Poaceae/clasificación , Zingiberaceae/clasificación
20.
Microsc Res Tech ; 83(8): 953-978, 2020 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-32378268

RESUMEN

Fertile plain of Central Punjab Pakistan is rich with fodder grasses and from centuries the local inhabitants of this area have been using their regional grasses for ruminant feeding. However, they always faced difficulties in identification because of their overlapping vernacular names, more or less identical leaf shapes, indefinite variations in stem branching pattern, and reduced floral parts. Hence, the current study has provided a detailed and comprehensive micro-morphological analysis of 53 ethnobotanical fodder grass taxa. A variety of quantitative and qualitative leaf epidermal micromorphological traits was studied and results reported epidermal characters like stomatal index, silica bodies, prickles, microhairs, hook cells as most diagnostic in delimitation of species, and genera. As stomatal index was 79% in Poa annua while in its closely related species Poa infirmai was 85%. Similarly, Cenchrus ciliaris can be differentiated from Cenchrus pennisetiformis on the basis of silica body shape as butterfly shaped in former and dumbbell shaped in later one. Moreover, prickles were present in Chrysopogon aucheri while absent in Chrysopogon zizanioides. Hence, overall this study declared that diversity and variations in foliar micromorphological characters are valuable and supportive in the identification of grasses at the specific and generic level.


Asunto(s)
Hojas de la Planta/anatomía & histología , Poaceae/anatomía & histología , Poaceae/clasificación , Microscopía Electrónica de Rastreo , Pakistán , Estomas de Plantas/anatomía & histología , Tricomas/anatomía & histología
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